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{2025.06}[2025a] GetOrganelle 1.7.7.1 #1347

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@PetrKralCZ
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@PetrKralCZ PetrKralCZ commented Dec 22, 2025 •
edited by boegel
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8 out of 154 required modules missing:

* Bowtie2/2.5.4-GCC-14.2.0 (Bowtie2-2.5.4-GCC-14.2.0.eb)
* MPFR/4.2.2-GCCcore-14.2.0 (MPFR-4.2.2-GCCcore-14.2.0.eb)
* MPC/1.3.1-GCCcore-14.2.0 (MPC-1.3.1-GCCcore-14.2.0.eb)
* SPAdes/4.2.0-GCC-14.2.0 (SPAdes-4.2.0-GCC-14.2.0.eb)
* gmpy2/2.2.0-GCCcore-14.2.0 (gmpy2-2.2.0-GCCcore-14.2.0.eb)
* sympy/1.14.0-gfbf-2025a (sympy-1.14.0-gfbf-2025a.eb)
* Bandage/0.9.0-GCCcore-14.2.0 (Bandage-0.9.0-GCCcore-14.2.0.eb)
* GetOrganelle/1.7.7.1-foss-2025a (GetOrganelle-1.7.7.1-foss-2025a.eb)

Needs:

@boegel boegel added the 2025.06-software.eessi.io 2025.06 version of software.eessi.io label Dec 23, 2025
@bedroge
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bedroge commented Dec 23, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

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eessi-bot-aws bot commented Dec 23, 2025 •
edited
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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.12/pr_1347/115535

date job status comment
Dec 23 12:26:21 UTC 2025 submitted job id 115535 awaits release by job manager
Dec 23 12:27:22 UTC 2025 released job awaits launch by Slurm scheduler
Dec 23 12:33:25 UTC 2025 running job 115535 is running
Dec 23 13:40:45 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-115535.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.* created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen2-17664972140.tar.zstsize: 49 MiB (51760665 bytes)
entries: 4254
modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all
Bandage/0.9.0-GCCcore-14.2.0.lua
Bowtie2/2.5.4-GCC-14.2.0.lua
GetOrganelle/1.7.7.1-foss-2025a.lua
gmpy2/2.2.0-GCCcore-14.2.0.lua
MPC/1.3.1-GCCcore-14.2.0.lua
MPFR/4.2.2-GCCcore-14.2.0.lua
SPAdes/4.2.0-GCC-14.2.0.lua
sympy/1.14.0-gfbf-2025a.lua
software under 2025.06/software/linux/x86_64/amd/zen2/software
Bandage/0.9.0-GCCcore-14.2.0
Bowtie2/2.5.4-GCC-14.2.0
GetOrganelle/1.7.7.1-foss-2025a
gmpy2/2.2.0-GCCcore-14.2.0
MPC/1.3.1-GCCcore-14.2.0
MPFR/4.2.2-GCCcore-14.2.0
SPAdes/4.2.0-GCC-14.2.0
sympy/1.14.0-gfbf-2025a
reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod
Bandage/0.9.0-GCCcore-14.2.0/20251223_123624UTC
Bowtie2/2.5.4-GCC-14.2.0/20251223_124636UTC
GetOrganelle/1.7.7.1-foss-2025a/20251223_133758UTC
gmpy2/2.2.0-GCCcore-14.2.0/20251223_130001UTC
MPC/1.3.1-GCCcore-14.2.0/20251223_125927UTC
MPFR/4.2.2-GCCcore-14.2.0/20251223_125528UTC
SPAdes/4.2.0-GCC-14.2.0/20251223_124449UTC
sympy/1.14.0-gfbf-2025a/20251223_133707UTC
other under 2025.06/software/linux/x86_64/amd/zen2
no other files in tarball
Dec 23 13:40:45 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-115535.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot-jsc
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eessi-bot-jsc bot commented Dec 23, 2025 •
edited
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New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.12/pr_1347/14326958

date job status comment
Dec 23 12:26:22 UTC 2025 submitted job id 14326958 awaits release by job manager
Dec 23 12:27:08 UTC 2025 released job awaits launch by Slurm scheduler
Dec 23 14:52:31 UTC 2025 running job 14326958 is running
Dec 23 15:05:56 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-14326958.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.* created!
Artefacts
eessi-2025.06-software-linux-aarch64-nvidia-grace-17665021920.tar.gzsize: 17 MiB (18805139 bytes)
entries: 384
modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all
Bandage/0.9.0-GCCcore-14.2.0.lua
SPAdes/4.2.0-GCC-14.2.0.lua
software under 2025.06/software/linux/aarch64/nvidia/grace/software
Bandage/0.9.0-GCCcore-14.2.0
SPAdes/4.2.0-GCC-14.2.0
reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod
Bandage/0.9.0-GCCcore-14.2.0/20251223_145544UTC
SPAdes/4.2.0-GCC-14.2.0/20251223_150040UTC
other under 2025.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Dec 23 15:05:56 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-14326958.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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3 participants

@PetrKralCZ @bedroge @boegel